Archive for November, 2005

Call for OA to a taxpayer-funded journal

Wednesday, November 30th, 2005

The World Law Bulletin (WLB) is published at taxpayer expense by the Library of Congress (LOC). But it’s only available to members of Congress and LOC staffers, not the general public. The November 4 issue of Secrecy News has a succinct recommendation: “This ought to change.”

Patrice McDermott, Deputy Director of Government Relations for the American Library Association, plans to send a letter to the Congressional Joint Committee on the LOC, calling for OA to the WLB. Excerpt:

We are writing to request that you encourage, if not direct, the Law Library of Congress to publish the World Law Bulletin on the World Wide Web for unrestricted public access. The World Law Bulletin, produced monthly by the Law Library of Congress, is a unique and uniquely valuable publication. It provides an unparalleled survey of legal developments abroad, along with focused analysis on topics of special interest. It is based entirely on open, published sources. Although it reflects the considerable expertise of its authors and contributors, the World Law Bulletin has no advisory content whatsoever. Therefore, to make it widely available to the public would not implicate congressional deliberations in any way. We are attorneys, librarians, scientists, academicians, and others who would like to be able to obtain, on a timely basis, no-fee access to the World Law Bulletin, which our tax dollars support. We respectfully urge you to help the interested public to gain access to this exceptional congressional resource.

If you would like to add your signature to her letter, send your name, title, and organization to pmcdermott@alawash.org before December 9.

source: Call for OA to a taxpayer-funded journal

ALPSP-SSP presentations

Wednesday, November 30th, 2005
The presentations from the ALPSP-SSP seminar, Preprint and postprint repositories and their impact on publishing (London, November 28, 2005), are now online. (Thanks to Colin Steele.)

source: ALPSP-SSP presentations

Report on the ALPSP-SSP seminar

Wednesday, November 30th, 2005
Kate Worlock, Repositories and their impact on publishing: the evidence begins to mount, EPS Insights, November 30, 2005 (accessible only to subscribers). A report on this week’s ALPSP-SSP seminar, Preprint and postprint repositories and their impact on publishing (London, November 28, 2005). Excerpt:
The number of institutional repositories worldwide is reaching significant levels, at least in some countries. SHERPA manager Bill Hubbard reported that there are now 57 repositories in the UK (some departmental, some institutional and some subject-based) and 153 in the US. The Netherlands has a policy that all academic research institutions must run their own repository and now boasts 17; China and India are making their mark with 13 and 5 respectively, and surprisingly Brazil has 30. While there have been claims that repositories are expensive to run…Hubbard claims that the cost to Nottingham University of running its repository equates to one technician working three days a week over the course of a year. Policies are now appearing from research funding organisations, institutions and departments either requesting or mandating that researchers place content in repositories. Key Perspectives’ data showed that 81% of academics would willingly comply with a mandate, 14% would comply reluctantly, and 5% would not comply. However, where organisations request rather than mandate deposit, this has had little effect: the National Institutes of Health policy requests and strongly encourages deposit of content in a repository, but in October only 2.73% of relevant articles were deposited as per this request….At the latest NIH committee meeting, members voted 9-3 in favour of making deposit mandatory, and this is likely to come into force in the summer of 2006. Jenny Pickles of Emerald Publishing expressed the fear that research funder mandates of this sort forced publishers to introduce embargoes, and saw this as a retrograde step for the open access movement….Key Perspectives’ Alma Swan laid out the reasons behind academics using repositories - the most important was to communicate their results to their peers. Other reasons included career advancement, personal prestige, to attract funding and for financial reward (a distant last). However, only 15% of academics surveyed had added preprint material to an institutional repository, while 20% had added postprint content….John Haynes of IOPP reported a near 100% overlap in high energy physics and astrophysics between what is published in journals and what is held in the renowned arXiv repository, which has become so well-used that for some physicists it is a “daily destination point”. IOPP policy allows deposit of postprints in arXiv because this increases visibility, and even allows authors to submit articles by simply sending in an arXiv e-print number. IOPP has found that where journals have a strong degree of overlap with arXiv, then articles are predominantly read on arXiv rather than on the publisher site, although the journal remains valued for prestige and citations.

source: Report on the ALPSP-SSP seminar

More on the book-scanning projects

Wednesday, November 30th, 2005
Andreas von Bubnoff, The Real Death of Print, Nature, December 1, 2005 (accessible only to subscribers). On the many current book-scanning projects. Excerpt:
[R]evolutions are rarely bloodless and this one could soon get ugly. In the United States authors and publishers are squaring up against Google for a legal fight over copyright. Opinion is divided over whether the scanning projects being implemented by companies such as Google and Amazon…will hand control of the world’s literature to private enterprise — and, if so, what this could mean. And with several independent scanning projects under way, it is still not clear how much of the information will be freely available, or where and how it can all be coordinated and accessed….Assets such as searchability have prompted the National Science Foundation (NSF) in Arlington, Virginia, to get involved in an open-access enterprise called the Million Book Project. This is an international scanning effort with many participants, including Carnegie Mellon University in Pittsburgh, Pennsylvania. Since the project began in 2002, about 600,000 out-of-copyright books have been scanned, although only about half of them are currently available online. The scanning takes place in India and China, with books being shipped there temporarily from libraries around the world….[Amazon’s] ‘search inside the book’ feature increases sales by 8%, the company says. Scientific publishers, such as the US National Academies Press also see increased print sales when they allow their books to be viewed online….Google’s plan has shaken up the digitalbook world in other ways too [beyond triggering lawsuits]. For one thing, many believe that its size and resources mean Google can pull of this feat — so large-scale repositories of digital books seem a more realistic and immediate prospect than ever before. Google has also galvanized its competitors, both public and private (see graphic) to redouble their efforts, and has placed a question mark over the future of libraries and librarians. “I think Google is in a class by itself because of the quantity of money and the level of centralization,” says Daniel Greenstein, librarian of the California Digital Library in Oakland, California. “Google has paved the way, created the appetite for this kind of activity, and anxiety on the part of libraries and publishers.”…Another person to be energized, but also alarmed, by Google’s move is Brewster Kahle, founder of the Internet Archive, a non-profit organization in San Francisco that archives web pages and other digital files. Although Google has never indicated that it plans to claim ownership over its digitized material or charge for search access, Kahle doesn’t want to leave digital books entirely in the hands of private enterprise. That’s why, in October, he announced the formation of the Open Content Alliance (OCA). This aims to build a permanent archive of multilingual digitized text and multimedia content, which, as far as possible, will be freely accessible….But Matthias Ulmer, a German publisher who helped launch an e-book initiative by the German Publishers and Booksellers Association, thinks that scanning old books is “a complete waste of money”. “Science is moving incredibly fast…,” says Ulmer. Earlier this year, his association announced an initiative whereby some 100 German publishers are considering digitizing about 100,000 newly published books by 2006. Publishers will take their own digital raw data and place them on a network of their own servers. Scientists and others will then be able to access the books for a fee.

source: More on the book-scanning projects

OA flu virus genome database

Wednesday, November 30th, 2005
On November 10, I blogged the fact that LANL Influenza Sequence Database ran out of funding and had to convert from OA to subscription-based access. I’m glad to report that there is, and long has been, another OA database of influenza genome sequences, the Influenza Virus Resource from the NCBI.

source: OA flu virus genome database

Book publishers should improve online access, not fight it

Wednesday, November 30th, 2005
David Worlock, Google and the battle for value, EPS, November 29, 2005. Another contribution to the EPS debate on Google Library. Excerpt:
Whatever Google and its peers have in store for beleaguered publishers, the power of the user poses challenges that go beyond the short term risks to volume sales and web disintermediation….As we move towards Web 2.0, early Amazon–style experimentation on the readable, downloadable online book will deepen and become more interesting. Trialling books online, using reader panels to create ratings (see the US e-learning rating scheme MERLOT) and instalment-download publishing will become more common. Publishers who wish to survive in this world will move co-operatively with their peers to create standards and trading conventions. There will be consolidation, and a healthy competitive crop of low cost market entrants who owe little to the culture and values of ‘publishing’ as it is understood today. User/reader preference will prevail: at every turn in the road in network publishing it has become ever clearer that the user is more important than the supplier, and that simple fact turns business models and conventional approaches upside down.

So the mass content availability being practiced by Google, or Yahoo!, or the British Library and Microsoft, is based upon research values (in which case it is unarguably defensible) or upon an acknowledgement of an unsatisfied user demand for ease of access. If it is the former, Google and Yahoo! may not find it a huge benefit in the pursuit of their advertising business model….If however, it is the latter, then it represents a call to arms for publishers. This is not a time to reduce accessibility but to improve it. This is the time when all publisher participants should be ensuring that everything they do is online, can be ordered in a variety of formats, is subject to cross-searching and analysis, has additional authorial material available for consultation, and that these values can be subscribed to and paid for alongside the sale of printed works….But for every trail-blazer there are too many still in denial, and in these seeking legal redress where competitive inventiveness should be the order of the day.

The law will not save “publishing as we know it today”. While Google may have got its consultation wrong, and while there may be justice to the righteous complaints of those whose rights were traduced, the long term issues remain unaffected. Fiddle with copyright law as we may, the results are always geographical, not global, and always five years too late. Competition law hates copyright, and beyond the protection of content in first use, it will become more and more difficult to protect re-use.

While the battles in the foothills around Napster and Grokster were won, file transfer services like BitTorrent are still shifting five times as much content (files, videos, books, music?) across the network as the whole activity of the Web itself. Some of this is legal: much of it is not. In the book industry’s anxiety to stem the perceived Google threat, it would be disastrous if this issue distracted publishers from the bigger opportunities to create high value network publishing – or the problems that they will face if they don’t.

source: Book publishers should improve online access, not fight it

Unpublished Einstein paper deposited in arXiv

Wednesday, November 30th, 2005
In 1922, Albert Einstein write a paper on the superconductibity of metals that he never published. After presenting it at a Dutch symposium, he apparently forgot about it and so did everyone else –until this year, when Cornell physicist Neal Ashcroft rediscovered it in a Dutch library. If you were Ashcroft, what you do then? What would Einstein do? That’s right, deposit it in arXiv. (The deposited copy is an English translation by Björn Schmekel.) For details, see yesterday’s story in LinuxElectrons.

source: Unpublished Einstein paper deposited in arXiv

Established medical journal shifts to OA

Wednesday, November 30th, 2005

The Netherlands Journal of Medicine changed to Open Access with the July-August 2005 issue. In a special report accompanying the change, the editorial board notes:

This represents a turning point for the Journal as open access publishing provides instant and universal availability of published work to any potential reader, worldwide, completely free of subscriptions, passwords and charges. This assures the widest possible dissemination of scientific knowledge from the Journal without boundaries of limited circulation or local availability of a hardcopy. We believe that by opening up we are making research available to a much wider range of readers than our print and subscription model would have been able to achieve.

In addition, the shift in access methods and publication processes (online ahead of print) has made it possible to eliminate the 4-6 month lag between publication of a paper in the journal and its indexing in PubMed.

Netherlands Journal of Medicine - Fulltext v60+ (2002+); Print ISSN: 0300-2977 | Online ISSN: 0928-1487.

source: Established medical journal shifts to OA

Frankfurt symposium presentations

Wednesday, November 30th, 2005
The presentations from the Frankfurt symposium, Is there any progress in alternative publishing? (Frankfurt, October 22-23, 2005), are now online. Some are PDFs, some PPTs, some videos, and some all of the above. (Thanks to Matthias Hanauske and Steffen Bernius.)

source: Frankfurt symposium presentations

More on the NGA decision to pull OA information offline

Wednesday, November 30th, 2005

The US National Geospatial-Intelligence Agency (NGA) will remove some OA aeronautical data from the internet. (Thanks to Patrice McDermott.) From yesterday’s press release:

The National Geospatial-Intelligence Agency (NGA) will go forward with its previously announced proposal to remove its Flight Information Publications (FLIP) and Digital Aeronautical Flight Information File (DAFIF) from public access. NGA is taking this action due to the increased numbers of international source providers claiming intellectual property rights of their data. Many of these sources forewarned NGA they intended to copyright their aeronautical data. NGA’s public release of data produced by others violated claimed copyright, forcing NGA to discontinue the release of this data to the general public. Government agencies and authorized government contractors are not affected by this action….As a result of input from the public comment period, NGA will phase in the removal of the affected NGA products from public access over a 22 month period….The first phase of the product withdrawal begins in January 2006 with the removal of worldwide DAFIF from public sale. The electronic distribution of DAFIF over the World Wide Web (www) and public sale of NGA FLIP outside US airspace will cease in October 2006. The remaining NGA FLIP will be removed from public access in October 2007.

(PS: While the NGA is a division of the Defense Department, this decision is not to protect national security. It’s to protect intellectual property.)

source: More on the NGA decision to pull OA information offline

EBSCO opens access to its LISTA database

Wednesday, November 30th, 2005

EBSCO Publishing is now providing free online access to its Library, Information Science & Technology Abstracts (LISTA) database. (Thanks to Buddy Pennington.) From the announcement:

This world-class bibliographic database provides coverage on subjects such as librarianship, classification, cataloging, bibliometrics, online information retrieval, information management and more. Delivered via the EBSCOhost platform, LISTA indexes more than 600 periodicals plus books, research reports, and proceedings. With coverage dating back to the mid-1960s, it is the oldest continuously produced database covering the field of information science.

source: EBSCO opens access to its LISTA database

New features at the self-archiving wiki

Wednesday, November 30th, 2005
Ari Friedman’s Self-Archiving wiki has added a third poster to its poster page. It also has a nifty new custom poster generator that lets you print out posters with (say) the name and URL of your institutional repository. For example, here’s a customized poster from the University of Pennsylvania. The wiki will also host information pages on individual archives. Use your imagination: these pages could be anything from descriptions and traffic reports to redirects or even copies of the overall self-archiving wiki with local references replacing global ones.

source: New features at the self-archiving wiki

Stevan Harnad on HAL

Wednesday, November 30th, 2005

Here are some of Stevan Harnad’s thoughts on HAL (November 29):

Apparently France — a country highly centralised since Napoleonic days, with its unique national research institutions, of which the CNRS is the biggest — is in a structural and functional position to do something, at a national level, at one stroke, that no other country is quite in the position to do. The idea is to create one national OA archive for all disciplines and all institutions and universities to deposit all their research into: HAL (Hyper Articles on Line). This unified national effort is meant to avoid the kinds of divisiveness that in the UK led to a self-archiving recommendation by a parliamentary committee, subsequently rejected by the government, subsequently taken up again by the 8 UK Research Councils (RCUK) and now opposed by the Royal Society (Britain’s academy of science). In France, there is now the hope that not only will the big national research institutes (CNRS, INSERM, INRA, INRIA) unite in this national enterprise, but so will the French Academy of Sciences, as well as all the French Universities. If it succeeds, it will be an enormous coup for France, and a terrific direction-setter for the rest of the world — though probably no country would be in a position to emulate it exactly, for lack of corresponding centralised national institutions….It will be interesting to see whether the centralisation proves to be an asset or liability. It is impossible to predict, because the case of France is so unique, but a UK study on central vs. institutional self-archiving came up with a different recommendation for the UK, suggesting that not only would distributed local institutional and university archives, plus harvesting (including central harvesting) be cheaper than a central archiving model in the era or OAI-interoperability, but, even more important, the local institutional incentives and culture are likely to be more conducive to archive-filling, because of shared interests and benefits between researchers and their institutions….But who knows? No one has a winning formula for reaching 100% OA as quickly and reliably as possible until a formula has been demonstrated to win. Perhaps France’s unique configuration makes a formula possible there that would not work elsewhere. Moreover, we live in a virtual world, and each institution’s and university’s sector of HAL could be customised and given the look of and put under the control of each local content-providing institution. The real question is whether France’s national OA mega-archive will be backed up with a self-archiving mandate, or it will rely only on volunteerism, for volunteerism has proved to be a poor deliverer of OA so far.

source: Stevan Harnad on HAL

More on HAL

Wednesday, November 30th, 2005

Since September, five major French research organizations –CNRS, Inserm, Inria, Inra, and the CPU– have been working together on a single, national OA repository called HAL (Hyper Article on Line). Here’s a recent (though undated) interview with Laurent Romary, Director of Scientific Communication at CNRS, on where HAL stands. (Thanks to Stevan Harnad.) Excerpt:

[HAL] is due to the convergence of three major movements. The first is the concept of direct scientific communications, initiated by the physics community and incarnated by the American Arxiv archive system. Second is the “open access” movement encouraging direct access to scientific publications, embodied by the Berlin declaration signed jointly by fifty major universities and European research organizations. Third, those organizations and universities need a reliable, detailed panorama of scientific publications, essential for their scientific policy and for evaluation purposes. The convergence of these three movements led to the decision to create a single archive for the entire French scientific community offering powerful, practical tools and services for research scientists and guaranteeing long-term preservation of documents. An agreement will be signed to formalize this collaboration between the various organizations. This single archive will significantly improve the visibility, dissemination, and the international impact of French scientific research, as data will be indexed by major search engines such as Google. Furthermore, the chosen platform – HAL (Hyper Articles on Line) – communicates with other major international archives such as Arxiv and (shortly) Pubmed Central….

This tool, developed by the CCSD and inspired by the American Arxiv system, offers research scientists a range of extremely useful services that make it a truly interactive solution (see the sidebar). HAL will soon be coupled with Term-Sciences, a multilingual terminology portal developed by Inist. This tool will enable users to search for and view international scientific terms in several languages….Finally, networks will be set up of “referring” documentalists trained by Inist. Serving the entire scientific community and working closely with research scientists, the documentalists will be notified automatically whenever a document is submitted. They will be responsible for verifying and correcting the quality of the metadata provided with the documents, which is vital for proper document indexing and dissemination. I should add that HAL will also enable research organizations to set up watchdog systems to identify emerging trends in research.

Here’s a brief “sidebar” on HAL by Bruno de la Perrière, from the same page as the interview:

“Today HAL is technically far superior to Arxiv”, proudly explains Franck Laloë, CCSD Director and creator of HAL. HAL provides an extensive set of tools and services that are extremely beneficial to research scientists: [1] automatic document submission (for both publications or pre-prints) with a link to an international open archive that increases visibility and impact, [2] simplified submission process for research scientists: a single submission can cover all the researcher’s work, evaluation procedures, activity reports, and replies to requests for quotations. The system provides tools for selecting and exporting publication lists, [3] advanced search engine, classification and searches using multiple criteria (publication date, scientific field, collection, organization, or laboratory), [4] automatic online extraction of all works by author, laboratory, or organization, with possible links to the organization’s local Web site (by including HAL in a given metadata structure, it is possible to specify the author/laboratory/organization affiliation), [4] creation of “collections” via buffers for authentication of a laboratory’s publications, the articles in a journal, etc. [5] alert and watchdog system that can be customized with user-defined profiles, [6] finally, HAL is designed to facilitate the creation of configurable interfaces for organizations to create their own environments.

source: More on HAL

Another blog comment on the Royal Society statement

Wednesday, November 30th, 2005
Paul Revere, The Royal Society of Microsoft, Effect Measure, November 29, 2005. Excerpt:
The Royal Society is protecting its turf (don’t blame them), but not protecting science. Many of us depend on OA journals, of which there are now hundreds (Disclaimer; one of the Reveres is Editor in Chief of an OA peer reviewed scientific journal). The developing world benefits. Scientists benefit because many more people are able to read their papers without having to subscribe to a journal. So if the Royal Society’s journals go under because they are the buggy whip of the automobile age, that’s too bad for them, but on balance science is better off.

source: Another blog comment on the Royal Society statement

Can journals afford to lower prices and profits?

Wednesday, November 30th, 2005
Dana Roth, Open Access Archives and STM Publishers, STLQ, November 25, 2005. Excerpt:
One wonders when commercial publishers might re-think their marketing strategies and recognize that their library subscribers deserve some compensation for years of annual price increases that far exceed inflation (for either CPI or pagination). The cumulative effect of decades of these often questionable price increases is exemplified by an analysis of the 2004 subscription costs, pagination, and cost/page. [Table for six journals]…Factoring in the ISI Impact Factors (IP) and normalization of the cost/page/IP values for each commercial journal against the Journal of the Electrochemical Society (JES) produces some very startling results. These normalized values (2004N$/p/IP) are possibly a measure of the cost-effectiveness of each journal compared with JES. [Table for six journals]…Given these presumably handsome profits, would it be unreasonable to suggest that commercial publishers consider making their online archives freely available thru an equivalent of PubMed Central? One can only imagine the enormous positive public relations that the first commercial publisher will receive for this small token of appreciation to the library and research community … and that this might encourage others to follow suit. This would also have the beneficial effect of freeing up funds for the learned society journal back files, which when their capital costs are met could also be made freely available. Thus, with a little publisher cooperation, an Open Access environment for virtually all journal articles published more than ten years ago would be a reality.

source: Can journals afford to lower prices and profits?

Davis graphs of Bergstrom-McAfee journal data

Tuesday, November 29th, 2005

Philip Davis, Journal Cost-Effectiveness Tables and Graphs, a preprint, November 29, 2005. A visual presentation of the data collected by Ted Bergstrom and Preston McAfee for their web site on journal cost-effectiveness. From Davis’ rationale: “The following tables and graphs focus on making comparisons between profit and non-profit publishers. The six largest publishers (Blackwell, Elsevier, Sage, Springer-Kluwer, Taylor & Francis and Wiley) are highlighted for comparison. This report does not advocate a particular position, nor does it necessarily represent the position of the author’s employer or institution. Feedback or suggestions for further analysis may be conveyed to the author by email at: pmd8 [at] cornell.edu.”

source: Davis graphs of Bergstrom-McAfee journal data

Another OA milestone

Tuesday, November 29th, 2005

The OA Crystallography Open Database has logged over 24,000 entries. From Armel Le Bail’s announcement today:

With the help of >30 volunteers declared after the Petition
for Open Data in Crystallography
(>1300 signatures), the increase is now attaining 2-3,000 new entries per month. Congratulations COD !

PS - This is not enough, a full database should contain
close to 500,000 crystal structures, and the increase per
year is currently close to 40,000…

source: Another OA milestone

Four more BMC titles added to WoS

Tuesday, November 29th, 2005

Four more journals in the BMC-series have (finally) been accepted for tracking by The Institute for Scientific Information (ISI).

BMC Developmental Biology, BMC Immunology, BMC Neurology, and BMC Structural Biology are now included in the Science Citation Index Expanded, available through the Web of Science, and are on track to receive an impact factor in 2008.

BMC Developmental Biology - Fulltext v1+ (2001+) BioMed Central | PubMed Central; ISSN: 1471-213X.

BMC Immunology - Fulltext v1+ (2000+) BioMed Central | PubMed Central; ISSN: 1471-2172.

BMC Neurology - Fulltext v1+ (2001+) BioMed Central | PubMed Central; ISSN 1471-2377.

BMC Structural Biology - Fulltext v1+ (2001+) BioMed Central | PubMed Central; ISSN: 1472-6807.

BioMed Central maintains an ongoing list of the abstracting and indexing services reviewing their various titles. I’ve added links for the PubMed Central mirrors of theses titles, but it should be noted that the preservation and distribution arrangements for the BioMed Central content is more extensive.

[Thanks to Dana L. Roth, Caltech]

Update. This is Peter updating George’s posting. I just heard from Matt Cockerill at BMC that BMC Plant Biology was also accepted by ISI. For all these journals, the ISI coverage starts in 2005, which means that the 2007 impact factors will be available in June 2008.

source: Four more BMC titles added to WoS

Aula talk: David Weinberger

Tuesday, November 29th, 2005

The Wall Street Journal called him a “marketing guru”. He’s the co-author of the The Cluetrain Manifesto, the bestseller that cut through the hype and told business what the Web was really about. His latest book, Small Pieces Loosely Joined has been published to rave reviews hailing it as the first book to put the Internet in its deepest context.

So I’m totally stoked to announce that David Weinberger has agreed to give the next Aula talk on Thursday, December 1st at 6 pm. The place is the PWC-lecture theatre (G-112) in the Chydenia building at the Helsinki School of Economics (Runeberginkatu 22-24). Thanks to folks at The Center of Knowledge and Innovation Research at the Helsinki School of Economics for offering the space.

David will speak on “The New Shape of Knowledge.” The summary he provided is worth quoting at length:

As businesses and media have looked at blogs, they’ve seen reflections of themselves. This continues a misunderstanding of the Web so persistent that it probably should count as a form of denial. Blogs are not a new form of journalism or primarily consist of teenagers whining about their teachers. Blogs are not even primarily a form of individual expression. They are better understood as conversations. This makes them just one more part of the transformation the Web is working on our social fabric, including the relationship of customers to businesses, employees to managers and business to society.

source: Aula talk: David Weinberger