Archive for March, 2006

RAE reform and the rising role of OA repositories in the UK

Sunday, March 26th, 2006

The UK is scrapping its old-style Research Assessment Exercise (RAE) for a metrics-based method of assessing research excellence and awarding funds. The new RAE should boost the fortunes of OA repositories in the UK and perhaps even the draft RUCK policy. Here’s how Stevan Harnad connects the dots:

RAE outcome is most closely correlated (r = 0.98) with the metric of prior RCUK research funding (Figure 4.1) (this is no doubt in part a “Matthew Effect“), but research citation impact is another metric highly correlated with the RAE outcome, even though it is not explicitly counted. Now it can be explicitly counted (along with other powerful new performance metrics) and all the rest of the ritualistic time-wasting can be abandoned, without further ceremony.

This represents a great boost for institutional self-archiving in Open Access Institutional Repositories, not only because that is the obvious, optimal means of submission to the new metric RAE, but because it is also a powerful means of maximising research impact, i.e., maximising those metrics: (I hope Research Councils UK (RCUK) is listening!).

source: RAE reform and the rising role of OA repositories in the UK

19 new institutional repositories in Japan

Sunday, March 26th, 2006
Japan’s National Institute of Informatics has announced plans to launch OA institutional repositories at 19 Japanese Universities. Of the 19, six are already operational. (Thanks to Shinji Mine.)

source: 19 new institutional repositories in Japan

Portal of OA back issues of Japanese journals

Sunday, March 26th, 2006
On March 27, the Japan Science and Technology Agency launched Journal@rchive, a portal for OA back issues to participating Japanese journals. These journals do not necessarily provide OA to their current issues. (Thanks to Shinji Mine.)

source: Portal of OA back issues of Japanese journals

Recent College Grads Show Major Shift in Internet Usage

Sunday, March 26th, 2006

Generation Y is graduating from college and enter the workforce, and that means some major changes are getting ready to start taking place. A new study by Y2M showed some interesting findings about their use of the Internet:

Career –On the career search front, 69 percent have posted a resume online. The bulk of these posting were on Monster.com, though postings on CareerBuilder.com showed the greatest year-over-year growth, with an increase of more than 400 percent.

Networking – Social networking is a dominant new trend, replacing many traditional avenues for entertainment and the sharing of information. There is a big shift away from alumni networks, supplanted by significant gains in social networking sites and the use of instant messaging. In fact, only 32 percent of respondents indicated they would seek out alumni for social purposes, down from a high of 70 percent in 2003. Conversely, visits to social networking sites have grown by 30 percent among frequent visitors.

Media – News consumption online has grown from 20 percent to 78 percent of respondents. Additionally, graduate publications, such as alumni magazines, are of little interest to graduates; however, 73 percent would like to receive their college newspaper via e-mail, underscoring the importance of campus media to graduating seniors and recent graduates.

It’s clear from this that the trend toward more and more virtual relationships, both for social and business purposes, is not slowing down, but actually accelerating. You now have a generation of people entering the work force who have had a personal computer in their house their entire life. In many cases they’ve had their own computer for at least five years. They’ve had Internet access for perhaps 10+ years and high-speed access for 5+. They’ve gone through college as heavy users of MySpace and Facebook. They read and write blogs.

If you’re not comfortable with using this technology and building relationships virtually, it’s time to get up to speed. This is no longer some fringe practice just for techies and academics — it’s just how modern business gets done.

This post was written by Scott Allen, source: Recent College Grads Show Major Shift in Internet Usage

Response to the ACS President on OA

Sunday, March 26th, 2006

Heather Morrison, Open Access: Transformative Change, Imaginary Journal of Poetic Economics, March 25, 2006. Excerpt:

An Open Letter to the President and Members of the American Chemical Society

Dear E. Ann Nally, President, ACS:

In a recent e-mail to ACS members, you inquire whether the NIH Public Access Policy is simply change for its own sake, whether it really adds value beyond what it presently available. As an open access advocate, let me explain. The NIH Public Access Policy is merely one piece in the move towards open access. The potential of open access is not change for the sake of change; it is transformative change, towards an unprecedented public good.  Consider, for example, how through open sharing of information, the world’s researchers were able to come together to map the human genome in a mind-bogglingly short time. Why not pursue this approach to solve the puzzle of developing sustainable, environmentally friendly energy resources - or to keep one step ahead of avian flu?  The NIH’s Public Access Policy extends the already openly available Medline index in PubMed. It can be argued that open access to Medline has been a key in the move towards evidence-based practice in medicine over the past few years, since this has brought access to medical evidence to practitioners everywhere….PubMedCentral also makes the research available to the general public, allowing the efforts of our doctors, nurses, and other health professionals to be supplemented by those individuals and family members who care to take advantage of this opportunity….The greatly expanded access that is open access will open up many, many opportunities. Professional practitioners in northern British Columbia will have the same access that is currently available at the teaching hospitals in Vancouver. More colleges, smaller universities and even high schools, will have ready access to the research literature, making it possible to teach in new ways, to develop an information and science literate populace. In the less-developed world, ready access to resources is one of the keys to developing education programs. Here, it is not just that colleges and universities will have more access; rather, more access will make it possible to develop more college and universities….

source: Response to the ACS President on OA

Will CMAJ join PLoS?

Sunday, March 26th, 2006

Paul Webster, Prescription for Canada: an unfettered medical journal, Globe and Mail, March 25, 2006. Excerpt:

It has been a month since the Canadian Medical Association, which represents 62,000 doctors, decided to freshen up its esteemed journal by firing the editor-in-chief, John Hoey, and his deputy, Anne Marie Todkill. Dr. Hoey and Ms. Todkill spent a decade transforming the bimonthly Canadian Medical Association Journal into one of the world’s more respected scientific publications. On Thursday, a story they supervised was nominated for the coveted Michener Award for meritorious public service. Since their departure, the CMAJ has imploded. Citing confusion within the doctors’ association over editorial independence — something Dr. Hoey and Ms. Todkill recently accused it of violating — eight senior and intermediate editors have resigned, along with 15 of the journal’s 19 editorial board members. Many Canadian scientists who have published pioneering studies in the CMAJ on such issues as SARS and other infectious disease outbreaks are starting to wonder if it’s healthy for the country’s only major medical-science publication to belong to an association aimed at promoting special interests, however enlightened.

The time has come, many researchers say, to rethink how to disseminate Canadian medical research. Support is growing for a fully independent, not-for-profit journal, free from owners with vested interests, and not reliant on advertising income. One of the ideas researchers are discussing is modelled on a series of journals published by Public Library of Science (PLoS), a San Francisco-based non-profit publisher launched in 2000 with support from almost 34,000 scientists and start-up financing from private foundations. PloS Biology, the most successful of the six Public Library of Science journals, already boasts having achieved more than twice as much measurable impact among scientists as the CMAJ does….Although CMAJ contents are free on-line, the journal is packed with pharmaceutical advertising, and is published by a holding company headed by a business executive. Many traditional journals now require that readers pay for on-line access, a development Dr. Hoey and Ms. Todkill pledged to resist before they were forced out….Alan Bernstein, a CMAJ board member who serves as president of the Canadian Institute for Health Research — Ottawa’s $800-million medical research agency — has consulted PLoS president Harold Varmus on ways to increase access to publicly supported Canadian research….

McGill University cancer researcher Eduardo Franco, one of PLoS Medicine’s three Canadian board members,…thinks the CMAJ crisis offers a strong opportunity for the launch of a Canadian medical journal free of corporate and political entanglement. Ownership by entities with strong commercial ties to big pharma, or, as in the case of the Canadian Medical Association, with strong ties to governments, often creates a situation where editors are not free,” says Dr. Franco, who was trained in Brazil, where free-access medical journals were pioneered. He praises PLoS for making scientific publication more transparent. “I’d love to see the CMAJ go that route.” Timothy Caulfield, a University of Alberta health-law researcher who also serves on PloS Medicine’s editorial board, says it makes good sense to divorce medical science from commercial publishing. “There’s increasing evidence commercial issues impact on what’s published,” he says. “Numerous studies indicate, if you get commercial funding from any source, you’re more likely to publish results favourable to that source.” John Willinsky, director of the Public Knowledge Project at the University of British Columbia, says he, too, feels that events at the CMAJ suggest an alternative scientific publication may be needed in Canada. “The advantage of this model is that it can be started quickly and at low cost,” says Prof. Willinsky, who resigned from the CMAJ board last week. “We don’t want to rush into this, but we could definitely do it.”

Comment. CMAJ is already OA, so the move to PLoS would not be a conversion. It would only change the business model from reliance on advertising to reliance on processing fees paid, on the whole, by authors’ research grants. The story is important for at least two reasons. It shows that the processing fee model can enhance editorial independence, not undermine it as some TA publishers have charged in the past. And the mainstream press is covering it.

source: Will CMAJ join PLoS?

Retrovirology added to ISI indexes

Saturday, March 25th, 2006

Retrovirology was recently added to the list of periodicals indexed in Web of Science. The journal was already indexed by PubMed, Embase, and Scopus.

Retrovirology — Fulltext v1+ (2004+) BioMed Central | PubMed Central; ISSN: 1742-4690.

source: Retrovirology added to ISI indexes

An OA journal for full detail on clinical drug trials

Saturday, March 25th, 2006
Douglas G. Altman and three co-authors,
Trials - using the opportunities of electronic publishing to improve the reporting of randomised trials
, Trials, March 23, 2006. The lead editorial in this issue.
Abstract (provisional): This editorial introduces the new online, open access, peer-reviewed journal Trials. The journal considers manuscripts on any aspect of the design, performance, and findings of randomised controlled trials in any discipline related to health care, and also encourages the publication of protocols. Trialists will be able to provide the necessary detail for a true and complete scientific record. They will be able to communicate not only all outcome measures, as well as varying analyses and interpretations, but also in-depth descriptions of what they did and honest reflections about what they learnt. Trials also encourages articles covering generic issues related to trials, for example focussing on the design, conduct, analysis, interpretation, or reporting.

source: An OA journal for full detail on clinical drug trials

Governments charging themselves for public information

Saturday, March 25th, 2006

It turns out that some UK government agencies pay the Ordnance Survey, another government agency, for access to publicly-funded geodata. See the details at Free Our Data.

PS: In the US, the highly-regarded and publicly-funded Congressional Research Service (CRS) reports are not generally OA. Citizens who want copies often have to pay private-sector publishers, as do agencies of the federal government.

source: Governments charging themselves for public information

How far will the gift culture spread?

Saturday, March 25th, 2006

Andy Updegrove, Where (if anywhere) are the Boundaries of the Open Source Concept? Consortium Standards Bulletin, March 24, 2006. Excerpt:

In the last several days there have been several stories in the news that highlight the increasing tension between ownership of intellectual property rights (IPR) and the opportunities that become available when broader, free access to those rights is made available.  The three articles that struck me as best proving this point were the announcement by Sun Microsystems that it had released the design for its new UltraSPARC processor under the GNU GPL, a speech by Tim Berners-Lee to an Oxford University audience in which he challenged the British government to make Ordinance Survey mapping data available at no cost for Web use, and reports that a Dutch court had upheld the validity of the Creative Commons license.  Each of these stories demonstrates a breach in traditional thinking about the balance of value to an IPR owner between licensing those rights for profit, or making those same rights freely and publicly available.


In the case of the Sun announcement, that breach is expansion of the open source methodology form software to silicon - a genetic leap, if you will, from one species of technology to another. Tim Berners-Lee’s challenge, on the other hand, is an example of the increasingly popular concept that "data wants to be free," and that the greatest societal benefit may result from allowing it to be so. And the Creative Commons victory demonstrates that traditional legal concepts can be adapted to successfully accommodate such new realities….

What this demonstrates is that the broad concept of open source is extensible into many types of situations, and may be managed in multiple ways. In the first case, the approach has moved from software to chip designs, and the initiative is organized on an open source software project model. In the second case, raw data is involved, and the delivery mechanism is through public (the Ordinance Survey example) or private (the Google example) means, for two entirely different motivations. In the third case, it is works of authorship of all types (literary, music, art, etc.) released by the individual author/owner, who may set the boundaries of that access through the simple means of referring to a specific variation of a publicly available license.


What this shows me is that the envelope of free use and public availability of IPR will continue to be pushed in more and more directions, and managed in more and more novel and situationally appropriate ways.  Crucial to this process will be the accumulating evidence in more and more domains that the owners of IPR may gain (indirectly) more by giving than selling (directly).  This is not as novel as might first be imagined.  IPR has always been a means to an end, rather than an end in itself….As more and more examples accumulate in increasingly diverse areas where IPR owners demonstrably gain by giving, it can be assumed that the owners of IPR in other areas will give thought to how the technique may be adapted to their own IPR assets and situations.  At some point, the inevitable tipping point will be reached, where an IPR owner will automatically consider which world she wishes her work to live in - open or closed, or in both, depending upon the specific use or user obtaining rights to use the IPR.  Is this inevitable?  Personally, I think it is.  This is one of those examples where the Internet really has “changed everything.”…I strongly doubt that the open source concept will be applied to every area of endeavor, or that it will predominate in every area where it is applied.  But I also believe that we may be surprised at some of the areas not yet imagined where it springs up next….

Updegrove’s article has spawned a Slashdot thread.

source: How far will the gift culture spread?

Free Culture, streamed

Saturday, March 25th, 2006

The folks at xml.com, part of the O’Reilly goodness, have made a streamed version of my book, Free Culture, available. You can access it as a stream, or download it to your device.

(Thanks, David!)

source: Free Culture, streamed

Spring issue of INASP Newsletter

Saturday, March 25th, 2006
The Spring issue of the INASP Newsletter
is now line. This issue has articles on Sri Lanka’s National Science Library and Resource Centre (NSLRC), Scholars Without Borders, the Asia-Pacific Information Network (APIN), the Editing and Publication Association of Bangladesh, MedKnow Publications in India, talks between INASP and FAO at the Tunis WSIS pre-conference, government-subsidized electronic access to journals in India, and publishing a first-class journal on a shoestring in Nepal.

source: Spring issue of INASP Newsletter

Indie fairness

Saturday, March 25th, 2006

The band Beatnik Turtle has released an “Indie Band Survival Guide” (free, as in CC). They’ve also now practiced an important virtue. A fan complained that he had purchased BT music through the new Napster. But when he stopped paying, the music went away. BT has sent the fan a free album. A lesson taught well.

source: Indie fairness

Is Grey different from Green?

Saturday, March 25th, 2006

TextRelease has announced that GreyNet offers a New Road to Open Access. Excerpt:

Since the relaunch of GreyNet by TextRelease in 2003, authors both in the [Grey Literature] Conference Series as well as those contributing to The Grey Journal (TGJ) sign-on to a “non-exclusive rights agreement”. The authors remain free to deposit their own work in other online repositories, which they deem fit. This non-exclusive rights agreement further allows GreyNet to negotiate licensing and cooperative publishing exchange of the full text and metadata contained in its in-house content base.”

Comment. In an email accompanying the announcement, TextRelease says that the grey road is a third path beyond the gold and green roads to OA. I must disagree. I applaud TextRelease for letting its authors deposit their work in OA repositories. But that’s the green road. Many different rights agreements with publishers are compatible with OA archiving and TextRelease’s agreement is just another in the series.

source: Is Grey different from Green?

home/not home

Saturday, March 25th, 2006

It feels very strange to be back in Rochester, but not in our house—particularly when I drive past “our house” to drop the kids off and see our tenants’ cars in the driveway, and unfamiliar faces through the windows. It’s quite unsettling.

Other than that, being back in Rochester has been great. This morning I took the kids to the RIT campus to hear Larry Lessig give a talk on free culture. The talk was spectacular. I think Lane understood and appreciated most of it, but Alex found it less engaging. (They both quite enjoyed this video that was included in the presentation—as did I!) Still, I’m glad they both went—even if only a little of it got through, it was worth it. (I also had the pleasure of joining Larry and some RIT colleagues for dinner last night, which was lovely.)

[If you’ve never had the privilege of seeing Professor Lessig speak on free culture, I was able to find a link to this similar talk that he gave in Helsinki last year. I encourage you to watch it.]

Tonight the boys are sleeping at friends’ houses, soaking up all the time with their buddies that they possibly can. So I get to relax at my mother’s house, where it’s blissfully quiet. Got some work done, got some gaming done, and now I’m off to bed.

source: home/not home

Free ebooks for your PDA

Friday, March 24th, 2006
Manybooks.net offers free ebooks for your PDA, iPod, ebook reader, or browser. Users may browse by author, title, category, language, or reader recommendations. Most titles are available in multiple formats, including ebook-reader formats and ordinary PDFs. (Thanks to the Scout Report.)

source: Free ebooks for your PDA

More on OA to biodiversity information

Friday, March 24th, 2006
The International Institute for Sustainable Development (IISD) has published highlights of the eighth meeting of the Conference of the Parties to the Convention on Biological Diversity (Curtiba, Brazil, March 20-31, 2006). Excerpt:
The Secretariat introduced relevant documents (UNEP/CBD/COP/8/17, 17/Add.1, and 18). COLOMBIA stressed repatriation of information and, supported by many, collaboration with other initiatives. CANADA urged parties to provide free and open access to information and, supported by the EU, suggested reference to the Global Biodiversity Information Facility. CHINA and CAMEROON highlighted supporting national clearing-house mechanisms.

source: More on OA to biodiversity information

Beilstein Journal of Organic Chemistry included in PubMed Central

Friday, March 24th, 2006

BioMed Central issued a press release today announcing the addition of the Beilstein Journal of Organic Chemistry (BJOC) to PubMed Central.

The Beilstein Journal of Organic Chemistry (BJOC) is now included in PubMed Central, the world’s largest digital archive of freely available full-text journal literature. PubMed Central hosts over 200 journals, mainly in the life sciences and medicine. BJOC is one of the first chemistry journals to be accepted for inclusion in the database, which will bring its articles to the attention of an enormous worldwide readership of biomedical scientists.

BJOC is published by the Beilstein-Institut, a name synonymous with quality in organic chemistry for two centuries, in co-operation with BioMed Central, the leading global publisher of open access journals. As one of the first open access journals in chemistry, BJOC allows readers free access to all content immediately upon publication. BJOC has no publication charges, is fully refereed and offers rapid publication. Authors may submit their articles online to the Editor-in-Chief, Professor Jonathan Clayden of the University of Manchester, UK. (www.beilstein-journals.org/BJOC).

Dr Martin Hicks, Director of the Beilstein-Institut, said ‘Our objective in publishing BJOC is to serve organic chemists worldwide by providing a high quality journal that serves their needs as authors and readers, without being a financial burden to their institutes. We are delighted that inclusion in PubMed Central will bring the high quality articles published in BJOC to the attention of the growing number of biomedical researchers with an interest in organic chemistry and chemical biology.’

Beilstein Journal of Organic Chemistry Fulltext v1+ (2005+) BioMed Central | PubMed Central; ISSN: 1860-5397.

source: Beilstein Journal of Organic Chemistry included in PubMed Central

More on the low compliance rate for the NIH policy

Friday, March 24th, 2006
Janice Hopkins Tanne, Researchers funded by NIH are failing to make data available, BMJ, March 25, 2006 (only the first 150 words are accessible to non-subscribers). Excerpt:
Most researchers who are funded by the US National Institutes of Health (NIH) do not provide free public access to their papers by posting them on PubMed Central, says an NIH report. Mandatory posting may be necessary to ensure that free access is given in future, says the report. Prodded by federal departments and Congressional committees, the NIH last year announced a policy on public access to increase the availability of research that it funds. It asked researchers to submit their final, peer reviewed manuscripts to the PubMed Central database—the NIH’s free digital archive of journal literature in the biomedical and life sciences—when their paper was accepted by a journal. However, less than 4% did so.

source: More on the low compliance rate for the NIH policy

Richard Poynder interviews Eric Raymond

Friday, March 24th, 2006
Richard Poynder has posted his interview with Eric Raymond, President Emeritus and Co-Founder of the Open Source Initiative. This is the latest installment of The Basement Interviews, Poynder’s blog-based OA book of interviews with leaders of many related openness initiatives.

source: Richard Poynder interviews Eric Raymond