Archive for June, 2006

boat blogging!

Friday, June 30th, 2006

Wow.

I’m sitting at the kitchen table on the 43’ yacht we’re renting for the next two weeks. The new Verizon broadband access card is plugged into my new Sony SZ240 notebook, and I’m online on the water. Amazing.

I was expecting this to be spectacularly unsuccessful, because today has not been a good technology day—from the Garmin GPS unit in our car inexplicably going dead to the home printer refusing to print Google maps to the Pharos GPS unit that I got with MIcrosoft Streets & Trips once again refusing to talk to my computer.

But Gerald, who has been incredibly, outrageously wonderful all week—handling every detail of packing, cleaning, and prepping to leave—sent us on our way at midday, and once we cleared the city (not so much fun waiting for a ferry on the Friday before the 4th of July…) things started looking up.

The boat is lovely, with enough space to comfortable house us for the next two weeks, and a lovely breeze even though it’s a pretty warm day. Gerald’s bringing fans when he arrives tonight, so I think we’ll be comfortable even without A/C.

We’ll be setting up a wifi network on the boat by plugging the Verizon card into my Powerbook and then sharing the signal over the Airport card—which means no fighting between the kids (or the mom) as to who gets to be online when we get tired of sunning, swimming, boating, and soaking (in the hot tub on the top deck).

That sound you hear? It’s all the stress rushing out of me as I slowly come to the realization that I am on vacation. Ahhhhhhhhh.

source: boat blogging!

Scirus indexes another OA repository

Friday, June 30th, 2006

Scirus Indexes Saarland University’s PsyDok Repository, a press release from Elsevier, June 27, 2006. Excerpt:
Elsevier announced today that Scirus, its free science-specific search engine, has added the contents of PsyDok, the psychology-based repository, to its index through a partnership with Saarland University, Germany. As part of its Repository Search service, Scirus is also powering the

source: Scirus indexes another OA repository

Repository reminders

Friday, June 30th, 2006

In response to the new RCUK OA policy, the July issue of Internet Resources Newsletter lists the major lists of OA repositories and the major subject-based repositories.

source: Repository reminders

CC heroes: Revver

Friday, June 30th, 2006

At the iCommons iSummit in Rio, Revver demonstrated its technology. This company is a poster child for alternative ways to get creators paid. Videos are distributed under a CC license. At the end is an ad bug. When the video is played, the creators get paid. The creators of the video below (geniuses) have earned many many many thousands of dollars for this video. Watch, think, enjoy: (Innovation brought to you by the Neutral Net). (I’m experimenting with the feature of Revver that feeds revenue back to the syndicator. Anything I get will be donated to charity.) (And Michael is my new hero — thank you for the poster!)



source: CC heroes: Revver

The Dems get Net Neutrality

Friday, June 30th, 2006

Lots happening with Net Neutrality, most significantly that the Democrats seem to have decided that this is their issue. The extraordinary tie created in the Senate Commerce Committee (11-11) on party lines (plus the amazing Senator Snowe) seems to signal a decision by leaders of the party that this is a fight they want to lead. The slogan does have a nice right to it — “Republicans: They sold the environment to Exxon, and sold the war to Halliburton. Now they want to sell the Internet to at&t.” (yea, the new logo is no-caps. a kinder, gentler …)

In my view, this is good news and bad. Good for the Dems that they got it. Bad that the issue is now within the grips of party politics. I guess it was just a matter of time, given how much money the cable and telcos have put on the table.

Here’s John Kerry on the vote: (bravo, Senator):

Stopping the Big Giveaway — by John Kerry

Yesterday in the Senate Commerce Committee I warned that those of us who believe in net neutrality will block legislation that doesn’t get the job done.

It looks like that’s the fight we’re going to have.

The Commerce Committee voted on net neutrality and it failed on an 11-11 tie. This vote was a gift to cable and telephone companies, and a slap in the face of every Internet user and consumer. It will not stand.

I voted against this lousy bill for two reasons: because net neutrality and internet build-out are crucial to building a more modern and fair Information Society, and both were pushed aside by the Republicans.

Everyone says they don’t want the new world we’re living in to be marked by the digital divide — the term is so clichéd it’s turned to mush — but yesterday was a test of who is willing to ask corporate America to do anything to fix it, and the Commerce Committee failed miserably. Why are United States Senators afraid to say that companies should be expected to foster growth by building out their broadband networks to increase access?

Free and open access to the internet is something all Americans should enjoy, regardless of what financial means they’re born into or where they live. It is profoundly disappointing that the Senate is going let a handful of companies hold internet access hostage by legalizing the cherry-picking of cable service providers and new entrants. That is a dynamic that would leave some communities with inferior service, higher cable rates, and even the loss of service. Not to mention inadequate internet service — in the age of the information.

This bill was passed in committee over our objections. Now we need to fight to either fix it or kill it in the full Senate. Senator Wyden has already drawn a line in the sand — putting a “hold” on the bill, which prevents it from going forward for now. But there will be a day of reckoning on this legislation soon, make no mistake about it, and we need you to get engaged — pressure your Senators, follow the issue, demand net neutrality and build-out.

source: The Dems get Net Neutrality

Economics of information control

Friday, June 30th, 2006

Stephen J. Grabill, The Economics of Information Control, Journal of Markets and Morality, Spring 2006. (Thanks to Jonathan Spalink.) Excerpt:
Open Access proponents praise the untold possibilities the new digital age affords for scholarship but, like Cohen and Rosenzweig, are highly critical of its commerical side. Many of them believe the serials crisis in journal publishing –which is tied

source: Economics of information control

Ask researchers and librarians, not publishers, whether access is adequate

Friday, June 30th, 2006

It takes a lot to make me mad…, CharteringLibrarian, June 29, 2006. Excerpt:
It takes a log to make me mad, but a post to the American Scientist Open Access forum managed to do just that today. Perhaps the RCUK announcement will not only help to increase access, but perhaps even more importantly, will begin to increase knowledge and understanding of open access?

Update. Lisa Dittrich’s

source: Ask researchers and librarians, not publishers, whether access is adequate

Ecch - that must have been poisonous! –more–

Friday, June 30th, 2006

Since consuming a misjudged sossie at a BBQ last Saturday, I’ve been suffering from a stomach bug, causing nausea, sweating and the occasional vomit (never fun). On top of this, I spent Monday to Wednesday in Serbia on a work trip.

The result — I’ve managed to miss the entirety of ApacheCon EU 2006 in Dublin. I considered dropping down to catch the end of it this morning, but had to abort the attempt due to a bout of in-transit nausea.

All in all, a pretty miserable week. :(

Update: here’s something vaguely uplifting — a cover of Europe’s ‘Final Countdown’ in Khmer.

Update 2: wow, that little stomach bug has been wreaking havoc — over the weekend 3 more people laid low in our social group. sorry all…

Tags:

This post was written by Justin, source: Ecch - that must have been poisonous! –more–

Richard Smith on OA and the new RCUK policy

Friday, June 30th, 2006

Richard Smith, Give it to me straight, doc, The Guardian, June 30, 2006.
The Guardian reports on the long running, life and death struggle to provide free access to medical research on its business pages, which I think is sad. The reports are on the business pages because some very large publishers - like Reed Elsevier - are threatened. Business types need to know whether to buy or sell. But the

source: Richard Smith on OA and the new RCUK policy

OA database of works in the public domain

Friday, June 30th, 2006

The Public Domain Works DB is a new, OA database of cultural works in the public domain. Still under construction, the present alpha version focuses on musical recordings. The database is a joint project ofOpen Knowledge Foundation.

Thanks to Rufus Pollock, who adds this comment on the OKF blog:This is a great ‘open knowledge’ project in that it combines code and data and has a strong focus on

source: OA database of works in the public domain

Moving beyond panic and protest

Friday, June 30th, 2006

NBC Nightly News broadcast a story on Wednesday about how it came to embrace YouTube after initially protesting its unpermitted use of NBC content. This is not about scholarly communication, of course, and the story starts with a clear, if beneficial, infringement of NBC’s copyright. But look past those differences to the fact that NBC changed its mind about YouTube when it realized that the new

source: Moving beyond panic and protest

Automating ETD archiving in Wales

Friday, June 30th, 2006

First national e-theses system launched in Wales, a press release from JISC, June 29, 2006. Excerpt:
Electronic theses held at Welsh universities can now be automatically deposited at the National Library of Wales thanks to a JISC project – the Repository Bridge - which has successfully completed its work.

As one of the UK’s legal deposit libraries, the National Library of Wales receives copies

source: Automating ETD archiving in Wales

BMC welcomes the new RCUK OA policy

Friday, June 30th, 2006

BioMed Central welcomes UK research councils actions to promote open access, a press release, June 29, 2006. Excerpt:
BioMed Central today welcomed the latest moves by the UK research councils to enhance access to publicly funded research in the UK.
The new policy statements from Research Councils UK (RCUK), and from the individual research councils, contribute additional momentum to the

source: BMC welcomes the new RCUK OA policy

The Prez, the PM, the King, and ITN and me

Friday, June 30th, 2006

Friday morning, rolling thunder wakes us up for breakfast, and the top news of the aggregated day, Koizumi is in the USA, headed for Graceland …

Mr Bush joked: “Officially, he’s here to see the president, but I know the highlight of his visit will be paying his respects to the King.”
[ Amazing Graceland for world leaders ]

But that’s not really news, is it? No, the news is that this news comes to me via the UK, on an RSS feed from ITN, the news wing of ITV (same folks who brought you Supercar and the Thunderbirds).

So, May asks, “Why are so many of our news items about UK entertainment gossip?” and the hard truth of that is partially because ITN, as the world’s largest news agency, does tend to also cover a fair bit of world ground, but far more than that, ITN provides a clean well-lit display, a fair re-use license, the editor-email address is actually read and ITV delivers the goods in real HTML, just the way Tim envisioned it, easy, portable, flexible, unencumbered by any deadweight AJaX, deadbeat delusions of ‘Design’ or nightmare labrynthical CSS.

source: The Prez, the PM, the King, and ITN and me

New OA journal on ethnic relations

Friday, June 30th, 2006

On July 3, the Aotearoa Ethnic Network will launch the AEN Journal, a peer-reviewed, OA journal on ethnic relations. For more details see today’s article in Scoop.

source: New OA journal on ethnic relations

More on OA to avian flu data

Thursday, June 29th, 2006

The time for sitting on flu data is over, Nature, June 28, 2006 (accessible only to subscribers). An unsigned editorial. Unfortunately, I don’t have access, but here’s an excerpt from Declan Butler’s blog posting on it:

Indonesia has become the hot spot of avian flu, with the virus spreading quickly in animal populations, and human cases occurring more often there than elsewhere. Yet from 51 reported human cases so far — 39 of them fatal — the genetic sequence of only one flu virus strain has been deposited in GenBank, the publicly accessible database for such information.

Yet scientists outside the WHO networks have no access to these data. The problem last year spurred the US National Institutes of Health (NIH) to create a consortium to sequence and make public thousands of flu strains from humans and birds. Very quickly, this more open approach led to the useful discovery that viruses swap genes with each other more frequently than had been previously thought.

Some political leaders are drawing the appropriate conclusions. Dennis Kucinich (Democrat, Ohio) and Wayne Gilchrest (Republican, Maryland) are circulating a letter in the House of Representatives that calls on Michael Levitt, the US health secretary, to require H5N1 sequences and other publicly funded research data “to be promptly deposited in a publicly accessible database, such as GenBank”.

From the Kucinich letter:

Pandemic preparedness planning demands all the scientific resources we can muster. Yet, access to some critical data on avian influenza is being restricted by countries and a few scientists for various reasons including intellectual property rights. As explained in the attached letter to Secretary Leavitt [Secretary of the Department of Health and Human Services or HHS], there are already models of public databases that provide protection for such concerns. Please join me in asking Secretary Leavitt to advocate that data from HHS funded research on avian influenza, and in particular, genetic sequences, be promptly placed in a publicly accessible database….

From Declan Butler’s blog posting:

[The belief that prestigious journals will not publish articles whose underlying data are already public is] ill-researched;…[anyone who read] the Dreams of Flu Data editorial [Nature, March 16, 2006]…could rest assured that: “Nature and its associated journals are not alone in supporting the rapid prior exposure of data when there are acute public-health necessities.”…

With respect to animal sequences, the Paris-based World Organisation for Animal Health (OIE) and the United Nations Food and Agriculture Organization (FAO) this month conceded to pressure and said that they would work with the NIH to sequence H5N1 samples from birds and deposit them in GenBank.

The World Health Organization (WHO), and its member states, are likewise acutely aware that the political pressure is now on for immediate access to human sequence and clinical data on H5N1 cases. There are legitimate issues to be worked out, such as ensuring that the researchers who do the sequencing, and the countries from which the samples are derived, get credit. But these are soluble, through various permutations, for example, of the Creative Commons licences, and other legal safeguards, that allow immediate sharing, while protecting the interests of the producer of the data. But the WHO knows very well that that the diplomatic imperatives that maintained the pre-SARs lack of transparency are no longer an option, and I think we will see leadership from it in the near future, perhaps before the end of summer.

Comment. For background, see my April article on OA to avian flu data.

Note to Nature: Given the topic and urgency, wouldn’t it make more sense to provide OA to this editorial than to charge $30 for pay-per-view?

source: More on OA to avian flu data

links for 2006-06-29

Thursday, June 29th, 2006

Tags:

This post was written by dailylinks, source: links for 2006-06-29

Recent OA developments

Thursday, June 29th, 2006

Creative destruction in the library, The Economist, June 29, 2006. An unsigned news story. Excerpt:

The normal mechanism [of academic journal publication] is that scientists offer the fruits of their research– often bankrolled by the taxpayer– for nothing to publishers. Those publishers then charge money to people who wish to read their journals. Publishers have been making handsome profits from this arrangement. But change is afoot. Open-access publishing, in which papers are freely available immediately upon publication, is sweeping the dusty corridors. The catch is that the sponsors of research will have to fork out more money to pay for it.

The new fashion is to be found on both sides of the Atlantic. In America John Cornyn, a Republican senator from Texas, and Joe Lieberman, a Democrat senator from Connecticut, recently introduced a bill that seeks to compel all federal government agencies “to develop public-access policies relating to research conducted by employees of that agency or from funds administered by that agency”. If it is passed, every American government outfit that commissions more than $100m-worth of research a year will have to make the results free to all-comers as soon as they are accepted for publication.


America’s biggest sponsor of medical research, the National Institutes of Health, has already thrown its weight behind such a move. For the past year it has strongly encouraged the recipients of its grants to make their results available on a free archive, called PubMed Central, as soon as they are published elsewhere.


In Britain, meanwhile, the Wellcome Trust (the world’s second-biggest medical-research charity), has gone a step further. Rather than encouraging its researchers to deposit electronic copies of their findings with PubMed Central, it compels them to do so –although they have six months after publication in which to comply….


Other arms of the British scientific establishment are involved, too. On June 28th three of the eight research councils that distribute government money to British scientists announced that, in future, any work they pay for will have to be published freely soon after being accepted for publication by a journal; the other five support the principle but are not in a position to enforce it.


Britain’s Royal Society, the world’s oldest scientific organisation, has also got in on the act. Like several other institutions that make at least some of their money from scientific publishing, the Royal Society had opposed open access on the grounds that standards might slip. If each article published brought additional revenue, an organisation might be tempted to run the unworthy as well as the worthy. But now the society has changed its mind, at least in part. On June 21st it launched a service that charges the authors of scientific papers a fee to post their work online as soon as it is accepted for publication by any of the society’s journals. Until now, authors have had to wait for a year before their work became freely available.


The Royal Society’s American counterpart, the National Academy of Sciences, is a convert, too. In 2005 its house journal, the Proceedings of the National Academy of Sciences, published 565 open-access papers, reflecting the fact that almost one in five authors asked (and paid) for their work to be made immediately and freely available….


There are, however, a few thorns among the roses. Traditional publishers are often sceptical about the business models of their open-access rivals, and they sometimes have cause to be. The Public Library of Science (PLoS), an American organisation regarded by many as the flagship of the open-access movement, lost almost $1m last year. As a result, it is about to increase its charge from $1,500 per article to as much as $2,500, depending on which of its journals an author publishes in. Undeterred, PLoS will, in August, launch an open-access online database called PLoS One….


BioMed Central, a British open-access publisher, has also increased its charges –from $500 to as much as $1,700 per article. It, too, has still to break even. Yet it received some good news this month. Thomson Scientific, a firm that evaluates the impact of journals, looked at citations made in 2005 of articles published between 2003 and 2004. Eleven journals published by BioMed Central received their first such assessment, and nine of them appeared in the top ten highest-impact journals in their fields. Whatever the traditional publishers might hope, open-access does not look in imminent danger of perishing.

Comment. This is a good survey of recent developments. I have just two corrections.

  1. “The catch is that the sponsors of research will have to fork out more money to pay for it.” This is misleading. When researchers publish in OA journals and sponsors agree to cover the costs, then it’s true the sponsors pay more ($500 - $3,000 more per article) than they would if they didn’t agree to cover the costs. But when funding agencies encourage or require OA archiving, they pay nothing at all when grantees deposit their work in their own institutional repositories and only a small amount when grantees deposit in the agency’s repository. For example, the NIH asks its grantees to deposit in its repository, PubMed Central, and the processing and hosting costs only come to about 0.01% of the agency’s budget. Moreover, in all these cases, the cost (small or large) must be set against the agency’s increased return on investment by making its research easier to discover, retrieve, and use. Finally, the cost (small or large) is only an increase over a policy not to support OA. Readers should not get the impression that it’s greater than the cost of the non-OA alternative, subscription journals, whose prices have skyrocketed almost four times faster than inflation in the past two decades. As subscription journals convert to OA, there will be huge savings for all the stakeholders.
  2. The Cornyn-Lieberman bill (FRPAA) does not require immediate OA but permits a six month delay.

source: Recent OA developments

More on the RCUK policy

Thursday, June 29th, 2006

Richard Wray, Boost for free internet access to public funded research, The Guardian, June 29, 2006. Excerpt:
The push for open access to publicly funded academic research was boosted yesterday as an umbrella body supported placing subscription journals’ articles on the internet for free.s preliminary proposal, outlined a year ago, suggested making it a condition of the grants that researchers

source: More on the RCUK policy

More on the new RCUK policy

Thursday, June 29th, 2006

British Group Retreats From Requiring Open Access to Research, Chronicle of Higher Education News Blog, June 28, 2006.

A year after releasing a draft policy on open access, the umbrella organization of Britain’s publicly financed research councils has softened its stance. The group, Research Councils UK, originally called for free access to papers resulting from research it financed “at the earliest opportunity” (The Chronicle, June 29, 2005). But now, in a new policy statement released today, the group will allow each of the eight member councils to formulate its own policy.


Thus far, only one research council –the Medical Research Council– requires free access, according to the blog of a leading open-access advocate, Peter Suber, who is director of the Open Access Project at Public Knowledge, a nonprofit group in Washington.


Nonetheless, the updated policy statement continues to support open access and asserts that “ideas and knowledge derived from publicly funded research must be made available and accessible for public use, interrogation, and scrutiny, as widely, rapidly, and effectively as possible.”


The open-access movement in the United States also seems to be evolving in fits and starts (The Chronicle, May 11).

Correction. In my blog posting yesterday, my quick skim of the eight Research Council web sites led me to overlook the fact that the Biotechnology & Biological Sciences Research Council (BBSRC) has adopted an OA mandate as strong as that of the Medical Research Council (MRC). Both will mandate OA to the research they fund, effective October 1, 2006. Both will require deposit “at the earliest opportunity”, though the MRC adds “and certainly within six months”. The MRC requires deposit in PubMed Central while the BBSRC requires deposit “in an appropriate e-print repository”. Both apply their policies to agency employees as well as grantees. My apologies for the omission.

source: More on the new RCUK policy